At almost 4,000 acres, Trout Brook is the largest subwatershed in the Capitol Region Watershed District and the City of Saint Paul. The restored stream is part of the 42 acre Trout Brook Nature Sanctuary project, whose goal is to return the area back to some resemblance of its pre-industrialized valley of stream floodplain and wetlands. Monitoring results within the corridor show that phosphorus, sediments, bacteria, lead and copper are the pollutants of most concern.
The Cannon River is a designated Wild and Scenic River that originates in Rice County and joins the Mississippi River 120 miles downstream near Red Wing. The Upper Cannon, which encompasses 29% of the entire watershed, has been identified as a priority subwatershed.